Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs113448118 chr7:1108954 G/A 0.000262 173 25.87 24.95 49.58 KM Plot
PCPG rs11344831 chr3:53092279 TC/T 7.28E-6 174 11.78 26.92 25.28 KM Plot
PCPG rs1134510 chr16:85222004 C/T 5.1E-9 173 25.6 23.83 15 KM Plot
PCPG rs11345496 chr8:126182340 CT/C 0.000275 178 25.77 25.53 4.17 KM Plot
PCPG rs113455787 chr21:38454445 A/G 9.4E-9 176 25.08 25.63 3.83 KM Plot
PCPG rs113476208 chr16:89590168 T/TATCTC 0.000269 177 27.6 25.53 19.25 KM Plot
PCPG rs113557319 chr22:50215987 T/G 0.000162 176 25.67 24.23 15.18 KM Plot
PCPG rs11356431 chr8:6731881 TA/T 7.25E-6 177 13.27 18.7 27.33 KM Plot
PCPG rs113570538 chr21:38561918 G/A 9.76E-9 176 24.85 25.87 3.83 KM Plot
PCPG rs113575180 chr3:53131043 G/C 8.54E-6 175 25.4 22.83 11.78 KM Plot
PCPG rs1135886 chr14:74526912 G/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs113592127 chr17:1440593 G/A 1.14E-5 178 24.7 26.73 25.17 KM Plot
PCPG rs11360152 chr13:37654752 AC/A 0.000287 178 4.17 24.23 25.92 KM Plot
PCPG rs1136070 chr16:1751935 C/T 0.000453 177 25.53 19.3 6.1 KM Plot
PCPG rs11361027 chr12:69009747 AT/A 1.33E-7 172 14.4 28.87 22.63 KM Plot